Protein ZmEREB65 | |
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Information | |
TF Name: | ZmEREB65 |
Species: | Maize |
TF Family: | AP2/ERF-ERF |
Gene Name(Synonym): | EREB65 |
Uniprot ID: | B6UHM5 |
Subgenome: | 2 |
ZmEREB65 is a protein in the AP2/ERF-ERF family.
Overview of domains present in v5 transcripts | |
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PF00847 | |
Zm00001eb103110_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d006170 | DAPseq | sequence | fimo | position | |
Zm00001d006170 | DAPseq | sequence | fimo | position | |
Zm00001d006170 | ChIPseq | sequence | fimo | position | |
Zm00001d006170 | PChIPseq | sequence | fimo | position |
MCPIKRETTSAESGSPCSSSTSTSSSSEHHQTAWASPPKKRPAGRTKFRETRHPVFRGVRRRGRAGRWVCEVRVPGRRGC
RLWLGTFDTAEAAARAHDAAMLAVAAGAARLNFADSAWLLAVPTASYASLADVRRAVAEAVESFLRRREEEEGDALSAAS
STSPNDKDGDESSSATTTDDDSPFELDMFGGMSWDLYYANLAQAMLVEPPPIVPALCDDGVASELPLWSY
MCPIKRETTSAESGSPCSSSTSTSSSSEHHQTAWASPPKKRPAGRTKFRETRHPVFRGVRRRGRAGRWVCEVRVPGRRGC
RLWLGTFDTAEAAARAHDAAMLAVAAGAARLNFADSAWLLAVPTASYASLADVRRAVAEAVESFLRRREEEEGDALSAAS
STSPNDKDGDESSSATTTDDDSPFELDMFGGMSWDLYYANLAQAMLVEPPPIVPALCDDGVASELPLWSY
MCPIKRETTSAESGSPCSSSTSTSSSSEHHQTAWASPPKKRPAGRTKFRETRHPVFRGVRRRGRAGRWVCEVRVPGRRGC
RLWLGTFDTAEAAARAHDAAMLAVAAGAARLNFADSAWLLAVPTASYASLADVRRAVAEAVESFLRRREEEEGDALSAAS
STSPNDKDGDESSSATTTDDDSPFELDMFGGMSWDLYYANLAQAMLVEPPPIVPALCDDGVASELPLWSY
MCPIKRETTSAESGSPCSSSTSTSSSSEHHQTAWASPPKKRPAGRTKFRETRHPVFRGVRRRGRAGRWVCEVRVPGRRGC
RLWLGTFDTAEAAARAHDAAMLAVAAGAARLNFADSAWLLAVPTASYASLADVRRAVAEAVESFLRRREEEEGDALSAAS
STSPNDKDGDESSSATTTDDDSPFELDMFGGMSWDLYYANLAQAMLVEPPPIVPALCDDGVASELPLWSY
MCPIKRETTSAESGSPCSSSTSTSSSSEHHQTAWASPPKKRPAGRTKFRETRHPVFRGVRRRGRAGRWVCEVRVPGRRGC
RLWLGTFDTAEAAARAHDAAMLAVAAGAARLNFADSAWLLAVPTASYASLADVRRAVAEAVESFLRRREEEEGDALSAAS
STSPNDKDGDESSSATTTDDDSPFELDMFGGMSWDLYYANLAQAMLVEPPPIVPALCDDGVASELPLWSY
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF00847 |
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Hover here to show all domains |
ATCGCAAAAACCACCCAAGGCCAAG...
ATCGCAAAAACCACCCAAGGCCAAGTCGCATCGCAGCAGCCAGGCAGATCGATCAACACCTTAAAATCGAGCGAGCTAAGATGTGCCCAATCAAGAGGGAGACGACGAGCGCCGAGTCCGGCTCGCCGTGCAGTAGCTCCACCTCCACCTCGTCGTCGTCGGAACACCACCAGACCGCGTGGGCGTCGCCGCCGAAGAAGCGGCCGGCGGGGCGCACCAAGTTCCGGGAGACGCGGCACCCGGTGTTCCGCGGCGTGCGGCGCCGGGGCCGCGCCGGGCGGTGGGTCTGCGAGGTGCGCGTGCCCGGGAGGCGCGGCTGCAGGCTCTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCCCGCGCGCACGACGCCGCGATGCTCGCCGTCGCCGCCGGCGCCGCGCGCCTCAACTTCGCGGACTCGGCGTGGCTGCTCGCCGTGCCGACGGCCTCGTACGCCAGCCTCGCCGACGTCCGCCGCGCCGTGGCGGAGGCCGTGGAGAGCTTCCTGCGCCGCCGCGAGGAGGAGGAGGGGGACGCGCTCTCGGCCGCGTCCTCGACGTCGCCCAACGACAAGGACGGCGACGAGTCCTCCTCGGCCACCACCACCGACGACGACTCGCCGTTCGAGCTGGACATGTTCGGTGGCATGAGCTGGGACCTGTACTACGCGAACTTGGCGCAGGCGATGCTCGTGGAGCCACCGCCCATTGTCCCCGCGTTATGCGACGACGGCGTGGCTTCCGAATTGCCGCTCTGGAGCTACTAGGCTAGGACTAGTGGTCGCTGTACTTTCGGTTTTTACCTTTTCTCGTTCTCGTCGTGTCCTGTGCCACAATTTGGTAACTGCACAAAGGTTACTGCTGCTTCTATTAACGAAACAGAGCAGATTGGGAAAAAAACAGAGCATGGCCGTTGACTTTGTAATGGTAGCAAAAAGTCTTGAGCTTATTATTATTATAGTGTTGACTCTC
MCPIKRETTSAESGSPCSSSTSTSSSSEHHQTAWASPPKKRPAGRTKFRETRHPVFRGVRRRGRAGRWVCEVRVPGRRGC
RLWLGTFDTAEAAARAHDAAMLAVAAGAARLNFADSAWLLAVPTASYASLADVRRAVAEAVESFLRRREEEEGDALSAAS
STSPNDKDGDESSSATTTDDDSPFELDMFGGMSWDLYYANLAQAMLVEPPPIVPALCDDGVASELPLWSY
CATCGCAAAAACCACCCAAGGCCAA...
CATCGCAAAAACCACCCAAGGCCAAGTCGCATCGCAGCAGCCAGGCAGATCGATCAACACCTTAAAATCGAGCGAGCTAAGATGTGCCCAATCAAGAGGGAGACGACGAGCGCCGAGTCCGGCTCGCCGTGCAGTAGCTCCACCTCCACCTCGTCGTCGTCGGAACACCACCAGACCGCGTGGGCGTCGCCGCCGAAGAAGCGGCCGGCGGGGCGCACCAAGTTCCGGGAGACGCGGCACCCGGTGTTCCGCGGCGTGCGGCGCCGGGGCCGCGCCGGGCGGTGGGTCTGCGAGGTGCGCGTGCCCGGGAGGCGCGGCTGCAGGCTCTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCCCGCGCGCACGACGCCGCGATGCTCGCCGTCGCCGCCGGCGCCGCGCGCCTCAACTTCGCGGACTCGGCGTGGCTGCTCGCCGTGCCGACGGCCTCGTACGCCAGCCTCGCCGACGTCCGCCGCGCCGTGGCGGAGGCCGTGGAGAGCTTCCTGCGCCGCCGCGAGGAGGAGGAGGGGGACGCGCTCTCGGCCGCGTCCTCGACGTCGCCCAACGACAAGGACGGCGACGAGTCCTCCTCGGCCACCACCACCGACGACGACTCGCCGTTCGAGCTGGACATGTTCGGTGGCATGAGCTGGGACCTGTACTACGCGAACTTGGCGCAGGCGATGCTCGTGGAGCCACCGCCCATTGTCCCCGCGTTATGCGACGACGGCGTGGCTTCCGAATTGCCGCTCTGGAGCTACTAGGCTAGGACTAGTGGTCGCTGTACTTTCGGTTTTTACCTTTTCTCGTTCTCGTCGTGTCCTGTGCCACAATTTGGTAACTGCACAAAGGTTACTGCTGCTTCTATTAACGAAACAGAGCAGATTGGGAAAAAAACAGAGCATGGCCGTTGACTTTGTAATGGTAGCAAAAAGTCTTGAGCTTATTATTATTATAGTGTTGACTCTCAATA
MCPIKRETTSAESGSPCSSSTSTSSSSEHHQTAWASPPKKRPAGRTKFRETRHPVFRGVRRRGRAGRWVCEVRVPGRRGC
RLWLGTFDTAEAAARAHDAAMLAVAAGAARLNFADSAWLLAVPTASYASLADVRRAVAEAVESFLRRREEEEGDALSAAS
STSPNDKDGDESSSATTTDDDSPFELDMFGGMSWDLYYANLAQAMLVEPPPIVPALCDDGVASELPLWSY
TCGCAGCAGCCAGGCAGATCGATCA...
TCGCAGCAGCCAGGCAGATCGATCAACACCTTAAAATCGAGCGAGCTAAGATGTGCCCAATCAAGAGGGAGACGACGAGCGCCGAGTCCGGCTCGCCGTGCAGTAGCTCCACCTCCACCTCGTCGTCGTCGGAACACCACCAGACCGCGTGGGCGTCGCCGCCGAAGAAGCGGCCGGCGGGGCGCACCAAGTTCCGGGAGACGCGGCACCCGGTGTTCCGCGGCGTGCGGCGCCGGGGCCGCGCCGGGCGGTGGGTCTGCGAGGTGCGCGTGCCCGGGAGGCGCGGCTGCAGGCTCTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCCCGCGCGCACGACGCCGCGATGCTCGCCGTCGCCGCCGGCGCCGCGCGCCTCAACTTCGCGGACTCGGCGTGGCTGCTCGCCGTGCCGACGGCCTCGTACGCCAGCCTCGCCGACGTCCGCCGCGCCGTGGCGGAGGCCGTGGAGAGCTTCCTGCGCCGCCGCGAGGAGGAGGAGGGGGACGCGCTCTCGGCCGCGTCCTCGACGTCGCCCAACGACAAGGACGGCGACGAGTCCTCCTCGGCCACCACCACCGACGACGACTCGCCGTTCGAGCTGGACATGTTCGGTGGCATGAGCTGGGACCTGTACTACGCGAACTTGGCGCAGGCGATGCTCGTGGAGCCACCGCCCATTGTCCCCGCGTTATGCGACGACGGCGTGGCTTCCGAATTGCCGCTCTGGAGCTACTAG
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